PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12401
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 135aa    MW: 15140.3 Da    PI: 8.0621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12401genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.45.3e-2711106194
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
               +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd+++ ePwd+++  ++ +  +++wy Fs++dkky+tg+r+nrat+ g+     +d  v++
  EMT12401  11 VPPGFRFHPTEEELLTYYLAKKVASQRIDL-DVIPDVDLNRPEPWDIQErcRIGTgPQNDWYLFSHKDKKYPTGTRTNRATAVGVCIPLDTDGGVHK 106
               69****************************.9***************953444442456********************988776555555555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-28794IPR003441NAC domain
PROSITE profilePS5100525.48411135IPR003441NAC domain
PfamPF023651.2E-121295IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLA KKVASQRIDL DVIPDVDLNR PEPWDIQERC  60
RIGTGPQNDW YLFSHKDKKY PTGTRTNRAT AVGVCIPLDT DGGVHKQTMK RAVCIPLDTD  120
GGVDKKPMKR AIAMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-2311931594Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678011e-133AK367801.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062J03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266835.11e-57uncharacterized protein LOC100830276
SwissprotQ84WP63e-52NAC43_ARATH; NAC domain-containing protein 43
SwissprotQ9M2743e-52NAC66_ARATH; NAC domain-containing protein 66
TrEMBLM8BEK83e-98M8BEK8_AEGTA; NAC domain-containing protein 43
STRINGMLOC_75524.15e-58(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.12e-53NAC domain protein 66